Note on the hybridization number and subtree distance in phylogenetics

DOI10.1016/J.AML.2008.08.018MaRDI QIDQ1021896zbMATH OpenOpenAlexFDO

Authors Peter J. Humphries, Charles Semple

Publication date 9 June 2009

Published in Applied Mathematics Letters (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.aml.2008.08.018

zbMATH Keywords

agreement forestshybridization numbersubtree prune and regraft

Mathematics Subject Classification ID

Trees (05C05) Applications of graph theory (05C90) Problems related to evolution (92D15)

Recommendations

• The rigid hybrid number for two phylogenetic trees
• SUBTREE TRANSFER DISTANCE FOR DEGREE-D PHYLOGENIES
• Phylogenetic distances for neighbour dependent substitution processes
• A cluster reduction for computing the subtree distance between phylogenies
• On the maximum parsimony distance between phylogenetic trees
• Reconstruction of some hybrid phylogenetic networks with homoplasies from distances
• Hybrid phylogenies with certain properties of regularity
• On a matching distance between rooted phylogenetic trees

Cites work

• Bounding the number of hybridisation events for a consistent evolutionary history
• Computing the minimum number of hybridization events for a consistent evolutionary history
• On the computational complexity of the rooted subtree prune and regraft distance
• Reconstructing evolution of sequences subject to recombination using parsimony

Cited in

(2)

• Extremal distances for subtree transfer operations in binary trees
• Order-dependent dissimilarity measures on phylogenetic trees

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