Classification of gene functions using support vector machine for time-course gene expression data

DOI10.1016/J.CSDA.2007.09.002MaRDI QIDQ1023587zbMATH OpenOpenAlexFDO

Authors Changyi Park, Ja-Yong Koo, Sujong Kim, Insuk Sohn, Jae Won Lee

Publication date 12 June 2009

Published in Computational Statistics and Data Analysis (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.csda.2007.09.002

zbMATH Keywords

B-spline basisFourier basisfunctional data classificationgene function

Mathematics Subject Classification ID

Computational methods for problems pertaining to statistics (62-08) Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Functional data analysis (62R10)

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Cites work

• Clustering functional data
• Comparing the shapes of regression functions
• Functional Classification in Hilbert Spaces
• Functional data analysis
• scientific article; zbMATH DE number 1391397 (Why is no real title available?)
• Performing hypothesis tests on the shape of functional data
• Support-vector networks

Cited in

(16)

• Optimal classification for time-course gene expression data using functional data analysis
• Polarization of forecast densities: a new approach to time series classification
• Efficient classification for longitudinal data
• Functional data classification using covariate-adjusted subspace projection
• A hypothesis test using bias-adjusted AR estimators for classifying time series in small samples
• SVM classification of human intergenic and gene sequences
• Gene function classification using NCI-60 cell line gene expression profiles
• Functional Classification of Genes Using Non-Negative Independent Component Analysis
• Functional logistic regression with fused lasso penalty
• Transfer learning for functional mean estimation: phase transition and adaptive algorithms
• Editorial: Computational statistics within clinical research
• Supervised classification using probabilistic decision graphs
• Adaptive clustering for time series: application for identifying cell cycle expressed genes
• Editorial: Statistical genetics \& statistical genomics: where biology, epistemology, statistics, and computation collide
• Informative transcription factor selection using support vector machine-based generalized approximate cross validation criteria
• Selecting marker genes for cancer classification using supervised weighted kernel clustering and the support vector machine

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• fda (R)

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