Reproducibility of genotypes as measured by the affymetrix GeneChip^ 100K human mapping array set

DOI10.1016/J.CSDA.2008.05.020MaRDI QIDQ1023919zbMATH OpenOpenAlexWikidataFDO

Authors Brooke L. Fridley, Stephen T. Turner, Arlene B. Chapman, Andrei Rodin, Eric Boerwinkle, Kent R. Bailey

Publication date 16 June 2009

Published in Computational Statistics and Data Analysis (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc2597860

Mathematics Subject Classification ID

Computational methods for problems pertaining to statistics (62-08) Applications of statistics to biology and medical sciences; meta analysis (62P10)

Recommendations

• Incorporating duplicate genotype data into linear trend tests of genetic association: methods and cost-effectiveness
• Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data
• Increase of rejection rate in case-control studies with the differential genotyping error rates
• Susceptibility of Biallelic Haplotype and Genotype Frequencies to Genotyping Error
• Using Duplicate Genotyped Data in Genetic Analyses: Testing Association and Estimating Error Rates

Cites work

• scientific article; zbMATH DE number 3221768 (Why is no real title available?)
• Increasing Power for Tests of Genetic Association in the Presence of Phenotype and/or Genotype Error by Use of Double-Sampling
• Using Duplicate Genotyped Data in Genetic Analyses: Testing Association and Estimating Error Rates

Cited in

(4)

• On the use of the terms repeatability and reproducibility regarding ``Reproducibility of genotypes as measured by the affymetrix GeneChip(R) 100K human mapping array set
• Editorial: Statistical genetics \& statistical genomics: where biology, epistemology, statistics, and computation collide
• Using Duplicate Genotyped Data in Genetic Analyses: Testing Association and Estimating Error Rates
• Incorporating duplicate genotype data into linear trend tests of genetic association: methods and cost-effectiveness

Describes a project that uses

Uses Software

• SimWalk2

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