Numerical solution of calcium-mediated dendritic branch model

DOI10.1016/J.CAM.2008.04.011MaRDI QIDQ1025879zbMATH OpenOpenAlexFDO

Authors J. Martínez

Publication date 23 June 2009

Published in Journal of Computational and Applied Mathematics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.cam.2008.04.011

zbMATH Keywords

dendritic spinesfinite difference methodsynaptic plasticitydendritesspectral collocationneuron models

Mathematics Subject Classification ID

Physiology (general) (92C30) Neural biology (92C20) Finite difference methods for boundary value problems involving PDEs (65N06) Spectral, collocation and related methods for boundary value problems involving PDEs (65N35) Computational methods for problems pertaining to biology (92-08)

Recommendations

• Modeling Calcium Dynamics in Dendritic Spines
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• Computer simulation of voltage sensitive calcium ion channels in a dendritic spine
• scientific article; zbMATH DE number 1236408
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• On finite element estimation of calcium advection diffusion in a multipolar neuron
• An electro-diffusion model for computing membrane potentials and ionic concentrations in branching dendrites, spines and axons
• Modeling calcium dynamics and inhibition based synaptic plasticity in dendritic spines
• Parallel numerical solution of intracellular calcium dynamics

Cites work

• scientific article; zbMATH DE number 193036 (Why is no real title available?)
• scientific article; zbMATH DE number 845474 (Why is no real title available?)
• A mathematical model of potential spreading along neuron dendrites of cerebellar granule cells
• A model of activity-dependent changes in dendritic spine density and spine structure
• Calcium-mediated spine stem restructuring
• Generation of Finite Difference Formulas on Arbitrarily Spaced Grids
• Mathematical physiology
• Model of the dynamics of receptor potential in a mechanoreceptor
• Spectral Methods in MATLAB
• The MATLAB ODE Suite
• Traveling waves in the Baer and Rinzel model of spine studded dendritic tissue

Cited in

(3)

• Spectral method and high-order finite differences for the nonlinear cable equation
• A comparison of six numerical methods for integrating a compartmental Hodgkin-Huxley type model
• Galerkin approximation for the problem of calcium diffusion in neuron cell involving pump leak and excess buffering approximation

Describes a project that uses

Uses Software

• Matlab
• ode23
• ode45
• Ode15s
• ode113
• ode23s
• MATLAB ODE suite

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