The alignment of protein structures in three dimensions
This article extends the use of dynamic programming algorithms in molecular sequence comparison to the alignment of the \(\alpha\)-carbon \((C_{\alpha})\)-coordinates of two protein structures in three dimensions. The algorithm is described in detail and is applied to the comparison of \(\alpha\)-lactalbumin with both hen egg white lysozyme and T4 lysozyme. In the first case, the structures are similar, while the second comparison is between two distantly related molecules. References are made to the usual sequence alignments. A variety of complementary methods are introduced to display the results.
- An algorithm for the distance between two finite sequences
- General methods of sequence comparison
- Householder's Method for the Solution of the Algebraic Eigenproblem
- scientific article; zbMATH DE number 3066379 (Why is no real title available?)
- scientific article; zbMATH DE number 3080144 (Why is no real title available?)
- Optimal sequence alignment using affine gap costs
- Stieltjes integration and differential geometry: A model for enzyme recognition, discrimination, and catalysis
- A differential geometric treatment of protein structure comparison
- Comparison of protein secondary structures based on backbone dihedral angles
- Multiple structure alignment based on geometrical correlation of secondary structure elements
- RMSD calculations for comparing protein three-dimensional structures
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