A faster algorithm computing string edit distances

From MaRDI portal
Publication:1140994

DOI10.1016/0022-0000(80)90002-1zbMath0436.68044OpenAlexW2012010763WikidataQ55891303 ScholiaQ55891303MaRDI QIDQ1140994

Michael S. Paterson, William J. Masek

Publication date: 1980

Published in: Journal of Computer and System Sciences (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/0022-0000(80)90002-1




Related Items (only showing first 100 items - show all)

Deposition and extension approach to find longest common subsequence for thousands of long sequencesPerformance analysis of some simple heuristics for computing longest common subsequencesGraphs cannot be indexed in polynomial time for sub-quadratic time string matching, unless SETH failsA faster linear systolic algorithm for recovering a longest common subsequenceA fast algorithm for computing a longest common increasing subsequenceRational equivalence relationsDynamic Set IntersectionFaster subsequence recognition in compressed stringsFast and compact regular expression matchingA linear space algorithm for computing a longest common increasing subsequenceNew tabulation and sparse dynamic programming based techniques for sequence similarity problemsFast approximate matching of words against a dictionaryThe longest common subsequence problem revisitedConstrained string editingAn \(O(ND)\) difference algorithm and its variationsThe set LCS problemBreadth-first search strategies for trie-based syntactic pattern recognitionA novel look-ahead optimization strategy for trie-based approximate string matchingA new distance metric on strings computable in linear timeConstrained pairwise and center-star sequences alignment problemsData structures and algorithms for approximate string matchingA lower bound for the edit-distance problem under an arbitrary cost functionA simple algorithm for the constrained sequence problemsA subquadratic algorithm for approximate limited expression matchingApproximating the geometric edit distanceLongest common subsequence problem for unoriented and cyclic stringsOptimality regions and fluctuations for Bernoulli last passage modelsA hardness result and new algorithm for the longest common palindromic subsequence problemHardness and approximation of the asynchronous border minimization problemAlgorithms in the Ultra-Wide Word ModelComputing a longest common subsequence that is almost increasing on sequences having no repeated elementsFast Algorithms for Local Similarity Queries in Two SequencesEfficient merged longest common subsequence algorithms for similar sequencesFast Algorithms for Computing Tree LCSConstrained LCS: Hardness and ApproximationOn the Longest Common Parameterized SubsequenceUnified compression-based acceleration of edit-distance computationA fully compressed algorithm for computing the edit distance of run-length encoded stringsCalcul de la distance par les sous-motsThe longest commonly positioned increasing subsequences problemString matching with weighted errorsQuadratic-time algorithm for a string constrained LCS problemWhy is it hard to beat \(O(n^2)\) for longest common weakly increasing subsequence?An O(NP) sequence comparison algorithmFACC: a novel finite automaton based on cloud computing for the multiple longest common subsequences searchQuantum meets fine-grained complexity: sublinear time quantum algorithms for string problemsApproximate Boyer-Moore string matching for small alphabetsFast computation of a longest increasing subsequence and applicationA divide and conquer approach and a work-optimal parallel algorithm for the LIS problemAn efficient algorithm for LCS problem between two arbitrary sequencesFaster algorithms for computing longest common increasing subsequencesAlgorithms for computing variants of the longest common subsequence problemEdit distance with move operationsEdit distance with block deletionsDynamic edit distance table under a general weighted cost functionOn the generalized constrained longest common subsequence problemsAn improved algorithm for computing the edit distance of run-length coded stringsTowards Approximate Matching in Compressed Strings: Local Subsequence RecognitionFast linear-space computations of longest common subsequencesFinding the longest common subsequence for multiple biological sequences by ant colony optimizationA space-efficient alphabet-independent Four-Russians' lookup table and a multithreaded Four-Russians' edit distance algorithmAn algorithm for matching run-length coded stringsConstrained sequence analysis algorithms in computational biologyEfficient algorithms for the longest common subsequence in \(k\)-length substringsA practical semi-external memory method for approximate pattern matchingNew efficient algorithms for the LCS and constrained LCS problemsFaster approximate string matching for short patternsFast searching in packed stringsApproximate pattern matching with the \(L_1\), \(L_2\) and \(L_\infty\) metricsFinding common structured patterns in linear graphsThe intractability of computing the Hamming distanceUnnamed ItemDiversity metrics for direct-coded variable-length chromosome shortest path problem evolutionary algorithmsTight conditional lower bounds for longest common increasing subsequenceLCS approximation via embedding into locally non-repetitive stringsEfficient algorithms for finding a longest common increasing subsequenceFast algorithms for computing tree LCSA new efficient algorithm for computing the longest common subsequenceSemi-local longest common subsequences in subquadratic timeCommunication-Efficient Private Protocols for Longest Common SubsequenceShift-or string matching with super-alphabetsLCS Approximation via Embedding into Local Non-repetitive StringsFast Searching in Packed StringsPeriodic String ComparisonNew Error Tolerant Method for Search of Long Repeats in DNA SequencesAn algorithm for distinguishing efficiently bit-strings by their subsequencesThe constrained longest common subsequence problemThe set-set LCS problemOn the longest common parameterized subsequenceMatching for run-length encoded stringsEfficient error-correcting parsing for (attributed and stochastic) tree grammarsComplexity measures of words based on string matching and edit distanceComputing a longest common subsequence for a set of stringsBIT-PARALLEL COMPUTATION OF LOCAL SIMILARITY SCORE MATRICES WITH UNITARY WEIGHTSFast distance multiplication of unit-Monge matricesA fast and practical bit-vector algorithm for the longest common subsequence problemResequencing a set of strings based on a target stringNew algorithms for the LCS problemEnumeration of maximal common subsequences between two stringsA data structure for substring-substring LCS length queries



Cites Work


This page was built for publication: A faster algorithm computing string edit distances