Identifying periodic occurrences of a template with applications to protein structure
From MaRDI portal
Publication:1209310
DOI10.1016/0020-0190(93)90245-5zbMath0764.92011OpenAlexW1991762134MaRDI QIDQ1209310
Peter H. Sellers, Gad M. Landau, Jeanette P. Schmidt, Vincent A. Fischetti
Publication date: 16 May 1993
Published in: Information Processing Letters (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/0020-0190(93)90245-5
Applications of mathematical programming (90C90) Abstract computational complexity for mathematical programming problems (90C60) Biochemistry, molecular biology (92C40) Parallel algorithms in computer science (68W10) Computational methods for problems pertaining to biology (92-08)
Related Items
Statistical tools for discovering pseudo-periodicities in biological sequences ⋮ Period recovery of strings over the Hamming and edit distances ⋮ Tandem cyclic alignment ⋮ Latent periodicity of serine-threonine and tyrosine protein kinases and other protein families ⋮ Periodic String Comparison
Cites Work
- Unnamed Item
- Unnamed Item
- Sequence comparison with concave weighting functions
- Approximate matching of regular expressions
- Speeding up dynamic programming with applications to molecular biology
- Time-space-optimal string matching
- A fast string searching algorithm
- An Improved Algorithm For Approximate String Matching
- Efficient randomized pattern-matching algorithms
- On the Theory and Computation of Evolutionary Distances
- A linear space algorithm for computing maximal common subsequences
- Fast Pattern Matching in Strings
- Fast parallel and serial approximate string matching
- The String-to-String Correction Problem