Molecular conformation on the CM-5 by parallel two-level simulated annealing

DOI10.1007/BF01096722MaRDI QIDQ1319005zbMATH OpenFDO

Authors Guoliang Xue

Publication date 12 April 1994

Published in Journal of Global Optimization (Search for Journal in Brave)

zbMATH Keywords

global optimizationparallel algorithmsLennard-Jones clustersmolecular conformationtwo- level simulated annealing

Mathematics Subject Classification ID

Parallel numerical computation (65Y05) Applications of mathematical programming (90C90) Biochemistry, molecular biology (92C40) Combinatorial optimization (90C27)

Recommendations

• A parallel build-up algorithm for global energy minimizations of molecular clusters using effective energy simulated annealing
• A parallel simulated annealing algorithm
• Parallel simulated annealing by mixing of states
• scientific article; zbMATH DE number 1101493
• A parallel Monte Carlo search algorithm for the conformational analysis of polypeptides

Cites work

• scientific article; zbMATH DE number 6118208 (Why is no real title available?)
• scientific article; zbMATH DE number 53193 (Why is no real title available?)
• scientific article; zbMATH DE number 192896 (Why is no real title available?)
• A Quantitative Theory of Genetic Recombination and Chiasma Formation
• Bayesian stopping rules for multistart global optimization methods
• Genetic algorithms and very fast simulated reannealing: A comparison
• Minimizing multimodal functions of continuous variables with the “simulated annealing” algorithm—Corrigenda for this article is available here
• On the limited memory BFGS method for large scale optimization
• Optimization by simulated annealing
• Very fast simulated re-annealing

Cited in

(9)

• Optimization methods for computing global minima of nonconvex potential energy functions
• A quadratic assignment formulation of the molecular conformation problem
• scientific article; zbMATH DE number 833650 (Why is no real title available?)
• scientific article; zbMATH DE number 4153653 (Why is no real title available?)
• An iterative global optimization algorithm for potential energy minimization
• Parallel continuous simulated annealing for global optimization simulated annealing^∗
• Optimal atomic-resolution structures of prion AGAAAAGA amyloid fibrils
• Parallel algorithms for global optimization problems
• An application of a global optimization parametrization method on macromolecular structure problem

Describes a project that uses

Uses Software

• L-BFGS
• simannf90

This page was built for publication: Molecular conformation on the CM-5 by parallel two-level simulated annealing

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q1319005)