Temporal fluctuations in the potential energy of proteins: 1/f^ noise and diffusion

DOI10.1016/S0167-2789(02)00426-8MaRDI QIDQ1348847zbMATH OpenOpenAlexFDO

Authors P. Carlini, A. R. Bizzarri, S. Cannistraro

Publication date 14 May 2002

Published in Physica D (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/s0167-2789(02)00426-8

zbMATH Keywords

fractional Brownian motionmolecular dynamics simulationpower spectra

Mathematics Subject Classification ID

Applications of Brownian motions and diffusion theory (population genetics, absorption problems, etc.) (60J70) Biochemistry, molecular biology (92C40) Biophysics (92C05)

Recommendations

• Long‐Time Protein Folding Dynamics from Short‐Time Molecular Dynamics Simulations
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• Ultrametric theory of conformational dynamics of protein molecules in a functional state and the description of experiments on the kinetics of CO binding to myoglobin

Cites work

• scientific article; zbMATH DE number 44693 (Why is no real title available?)
• scientific article; zbMATH DE number 274379 (Why is no real title available?)
• A DYNAMICAL APPROACH TO FRACTIONAL BROWNIAN MOTION
• A comparsion of estimators for \(1/f\) noise
• Fractional Brownian Motions, Fractional Noises and Applications
• On the interpretation of 1/f noise
• Practical implementation of nonlinear time series methods: The TISEAN package
• Spectral Analysis for Physical Applications

Cited in

(10)

• Oscillations in \(p\)-adic diffusion processes and simulation of the conformational dynamics of protein
• Describing some properties of adenylat kinase using fractal concepts
• A non-linear approach to the structure-mobility relationship in protein main chains
• scientific article; zbMATH DE number 5313386 (Why is no real title available?)
• Modeling of noise-assisted quantum transfer between donor and acceptor with finite bandwidths
• Noise-assisted quantum electron transfer in photosynthetic complexes
• SYNCHRONIZATION IN BIOCHEMICAL SUBSTANCE EXCHANGE BETWEEN TWO CELLS
• Protein Dynamical Heterogeneity Derived from Neutron Incoherent Elastic Scattering
• Systematic detection of hidden complexities in the unfolding mechanism of a cytosine-rich DNA strand
• Non-Hermitian approach for modeling of noise-assisted quantum electron transfer in photosynthetic complexes

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Uses Software

• GROMOS
• sapa

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