A quadratic approximation for protein sequence to structure mapping.

DOI10.1007/BF02936189zbMATH Open1042.92010OpenAlexW2084051739MaRDI QIDQ1432811FDOQ1432811

Authors Jae Heon Yun, Sei-Young Chung, Seyoung Oh

Publication date 22 June 2004

Published in Journal of Applied Mathematics and Computing (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/bf02936189

zbMATH Keywords

quadratic approximationsequence to structure mapping

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20) Applications of functional analysis in probability theory and statistics (46N30) Computational methods for problems pertaining to biology (92-08) Biophysics (92C05)

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Cites work

• scientific article; zbMATH DE number 3497315 (Why is no real title available?)
• Finding the lowest free energy conformation of a protein is an NP-hard problem: Proof and implications
• Optimization by simulated annealing

Cited in

(2)

• PROSIGN: a method for protein secondary structure assignment based on three-dimensional coordinates of consecutive \(C_\alpha \) atoms
• Comparison study of two kernel-based learning algorithms for predicting the distance range between antibody interface residues and antigen surface

Describes a project that uses

Uses Software

• QPOPT
• SQOPT

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