Baycount: a Bayesian decomposition method for inferring tumor heterogeneity using RNA-seq counts

DOI10.1214/17-AOAS1123zbMath1405.62219arXiv1702.07981OpenAlexW2951090197MaRDI QIDQ1621002

Fangzheng Xie, Mingyuan Zhou, Yanxun Xu

Publication date: 15 November 2018

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1702.07981

zbMATH Keywords

compound PoissonMarkov chain Monte Carlooverdispersionnegative binomialcancer genomics

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Bayesian inference (62F15)

Related Items

BayICE: a Bayesian hierarchical model for semireference-based deconvolution of bulk transcriptomic data ⋮ BayCount ⋮ RNDClone: tumor subclone reconstruction based on integrating DNA and RNA sequence data

Uses Software

• R
• featureCounts
• PhyloWGS
• THetA
• PyClone

Cites Work

• Unnamed Item
• Automatic dimensionality selection from the scree plot via the use of profile likelihood
• Forecasting time series of inhomogeneous Poisson processes with application to call center workforce management
• Learning the parts of objects by non-negative matrix factorization
• MAD Bayes for Tumor Heterogeneity—Feature Allocation With Exponential Family Sampling
• THE TRANSFORMATION OF POISSON, BINOMIAL AND NEGATIVE-BINOMIAL DATA

This page was built for publication: Baycount: a Bayesian decomposition method for inferring tumor heterogeneity using RNA-seq counts