Exploring the conformational space for protein folding with sequential Monte Carlo

DOI10.1214/17-AOAS1124MaRDI QIDQ1621004zbMATH OpenOpenAlexFDO

Authors Samuel W. K. Wong, Jun S. Liu, S. C. Kou

Publication date 15 November 2018

Published in The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL https://projecteuclid.org/euclid.aoas/1536652968

zbMATH Keywords

energy optimizationparticle filterprotein structure predictionstructure refinement

Mathematics Subject Classification ID

Sequential estimation (62L12) Applications of statistics to biology and medical sciences; meta analysis (62P10)

Recommendations

• scientific article; zbMATH DE number 1984446
• An optimization approach to the problem of protein structure prediction
• scientific article; zbMATH DE number 426426
• Determination of protein structure and dynamics combining immune algorithms and pattern search methods
• Molecular Modeling of Proteins and Mathematical Prediction of Protein Structure

Cites work

• scientific article; zbMATH DE number 1666084 (Why is no real title available?)
• Lookahead strategies for sequential Monte Carlo
• Monte Carlo strategies in scientific computing
• On-Line Inference for Hidden Markov Models via Particle Filters
• Rejection Control and Sequential Importance Sampling
• Sequential Monte Carlo Methods for Dynamic Systems
• The Multiple-Try Method and Local Optimization in Metropolis Sampling

Cited in

(10)

• Ab-initio prediction and reliability of protein structural genomics by PROPAINOR algorithm
• Fitting protein-folding free energy landscape for a certain conformation to an NK fitness landscape
• scientific article; zbMATH DE number 1531956 (Why is no real title available?)
• scientific article; zbMATH DE number 841182 (Why is no real title available?)
• Structure calculation of protein segments connecting domains with definded secondary structure: a simulated annealing Monte Carlo combined with biased scaled collective variables technique
• Computational Science – ICCS 2005
• Discussion of ``Equi-energy sampler by Kou, Zhou and Wong
• Estimating Boltzmann averages for protein structural quantities using sequential Monte Carlo
• A parallel Monte Carlo search algorithm for the conformational analysis of polypeptides
• Sampling conformation space to model equilibrium fluctuations in proteins

Describes a project that uses

Uses Software

• HHpred
• PISCES

This page was built for publication: Exploring the conformational space for protein folding with sequential Monte Carlo

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q1621004)