Uncovering operational interactions in genetic networks using asynchronous Boolean dynamics
DOI10.1016/J.JTBI.2009.06.006zbMATH Open1402.92207OpenAlexW2048152443WikidataQ51820565 ScholiaQ51820565MaRDI QIDQ1625862FDOQ1625862
Authors: Laurent Tournier, Madalena Chaves 
Publication date: 26 November 2018
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jtbi.2009.06.006
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Biochemistry, molecular biology (92C40) Systems biology, networks (92C42) Software, source code, etc. for problems pertaining to biology (92-04) Cell biology (92C37)
Cites Work
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- Multistationarity, the basis of cell differentiation and memory. II: Logical analysis of regulatory networks in terms of feedback circuits
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- Graphic requirements for multistability and attractive cycles in a Boolean dynamical framework
- Temporal constraints in the logical analysis of regulatory networks
- Mathematical model of NF-\( \kappa\)B regulatory module
- A survey of model reduction methods for large-scale systems.
- Positive and negative circuits in dynamical systems
- Multistationarity, the basis of cell differentiation and memory. I: Structural conditions of multistationarity and other nontrivial behavior
- Identifying feedback mechanisms behind complex cell behavior
- Robustness and fragility of Boolean models for genetic regulatory networks
- Title not available (Why is that?)
Cited In (20)
- Design of fixed points in Boolean networks using feedback vertex sets and model reduction
- An adjustable aperiodic model class of genomic interactions using continuous time Boolean networks (Boolean delay equations)
- Relationship between the reprogramming determinants of Boolean networks and their interaction graph
- Boolean network-based analysis of the apoptosis network: irreversible apoptosis and stable surviving
- Exact control of genetic networks in a qualitative framework: the bistable switch example
- Stabilization of probabilistic Boolean networks via pinning control strategy
- Pinning control design for feedback stabilization of constrained Boolean control networks
- State feedback stabilization for probabilistic Boolean networks
- Optimization-based approaches to control of probabilistic Boolean networks
- Numerical simulation of piecewise-linear models of gene regulatory networks using complementarity systems
- Attractor analysis of asynchronous Boolean models of signal transduction networks
- On convergence for hybrid models of gene regulatory networks under polytopic uncertainties: a Lyapunov approach
- Analysis and characterization of asynchronous state transition graphs using extremal states
- Probabilistic approach for predicting periodic orbits in piecewise affine differential models
- Dynamical modeling and analysis of large cellular regulatory networks
- Global dynamics for switching systems and their extensions by linear differential equations
- Vanishing configurations in network dynamics with asynchronous updates
- Mapping multivalued onto Boolean dynamics
- Combinatorial representation of parameter space for switching networks
- Comparison of combinatorial signatures of global network dynamics generated by two classes of ODE models
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