TN curve: a novel 3D graphical representation of DNA sequence based on trinucleotides and its applications

DOI10.1016/j.jtbi.2009.08.005zbMath1403.92226OpenAlexW2035588116WikidataQ84398882 ScholiaQ84398882MaRDI QIDQ1628919

Jia-Feng Yu, Xiao Sun, Ji Hua Wang

Publication date: 11 December 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc7094124

zbMATH Keywords

projectioncoding sequencenumerical descriptorsimilarity/dissimilarity analysis

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Related Items (12)

DUC-curve, a highly compact 2D graphical representation of DNA sequences and its application in sequence alignment ⋮ Intrinsic correlation of oligonucleotides: a novel genomic signature for metagenome analysis ⋮ C-curve: a novel 3D graphical representation of DNA sequence based on codons ⋮ Protein Sequence Comparison Method Based on 3-ary Huffman Coding ⋮ Classification studies based on a spectral representation of DNA ⋮ New method for comparing DNA primary sequences based on a discrimination measure ⋮ 2D-MH: a web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids ⋮ Circular helix-like curve: an effective tool of biological sequence analysis and comparison ⋮ Three 3D graphical representations of DNA primary sequences based on the classifications of DNA bases and their applications ⋮ Sequence comparison via polar coordinates representation and curve tree ⋮ The disposition of the LZCC protein residues in wenxiang diagram provides new insights into the protein-protein interaction mechanism ⋮ Disease embryo development network reveals the relationship between disease genes and embryo development genes

Uses Software

• GPCR-CA

Cites Work

• Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image
• An application of gene comparative image for predicting the effect on replication ratio by HBV virus gene missense mutation
• Invariants of DNA sequences based on 2DD-curves
• PNN-curve: a new 2D graphical representation of DNA sequences and its application
• New 3D graphical representation of DNA sequence based on dual nucleotides
• The community structure of human cellular signaling network
• On the similarity of DNA primary sequences based on 5-D representation
• A 3D graphical representation of DNA sequences and its application
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