The Chern-Simons current in time series of knots and links in proteins

DOI10.1016/J.AOP.2018.04.002MaRDI QIDQ1636082zbMATH OpenOpenAlexFDO

Authors Salvatore Capozziello, R. Pincak

Publication date 4 June 2018

Published in Annals of Physics (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/1804.11193

zbMATH Keywords

time seriesgenetic codespinor fieldghost fieldChern-Simons current

Mathematics Subject Classification ID

Time series, auto-correlation, regression, etc. in statistics (GARCH) (62M10) Protein sequences, DNA sequences (92D20) Applications of global analysis to the sciences (58Z05) Quantum field theory; related classical field theories (81T99)

Abstract: A superspace model of knots and links for DNA time series data is proposed to take into account the feedback loop from docking to undocking state of protein-protein interactions. In particular, the direction of interactions between the 8 hidden states of DNA is considered. It is a $E_{8}imes{E}_8$ unified spin model where the genotype, from active and inactive side of DNA time data series, can be considered for any living organism. The mathematical model is borrowed from loop-quantum gravity and adapted to biology. It is used to derive equations for gene expression describing transitions from ground to excited states, and for the 8 coupling states between geneon and anti-geneon transposon and retrotransposon in trash DNA. Specifically, we adopt a modified Grothendieck cohomology and a modified Khovanov cohomology for biology. The result is a Chern-Simons current in $(8+3)$ extradimensions of a given unoriented super manifold with ghost fields of protein structures. The $8$ dimensions come from the 8 hidden states of spinor field of genetic code. The extradimensions come from the 3 types of principle fiber bundle in the secondary protein.

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Cited in

(4)

• GARCH in spinor field
• The Chern‐Simons Current in Systems of DNA‐RNA Transcriptions
• Forecasting Laurent Polynomial in the Chern–Simons Current of V3 Loop Time Series
• Cohomology theory for biological time series

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