Ensemble survival tree models to reveal pairwise interactions of variables with time-to-events outcomes in low-dimensional setting

DOI10.1515/SAGMB-2017-0038zbMATH1398.92010OpenAlexW2790219140WikidataQ49905853MaRDI QIDQ1672811FDOQ1672811

Authors Jean-Eudes Dazard, Hemant Ishwaran, Rajeev Mehlotra, Aaron Weinberg, Peter Zimmerman

Publication date 11 September 2018

Published in Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc5844232

zbMATH Keywords

epistasisgenetic variations interactionsinteraction detection and modelingrandom survival foresttime-to-event analysis

Mathematics Subject Classification ID

Linear regression; mixed models (62J05) Estimation in survival analysis and censored data (62N02) Applications of statistics to biology and medical sciences; meta analysis (62P10) General biostatistics (92B15) Genetics and epigenetics (92D10) Testing in survival analysis and censored data (62N03)

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Cites work

• scientific article; zbMATH DE number 3567782 (Why is no real title available?)
• scientific article; zbMATH DE number 708500 (Why is no real title available?)
• scientific article; zbMATH DE number 3385132 (Why is no real title available?)
• A Permutation Approach to Testing Interactions for Binary Response by Comparing Correlations Between Classes
• A lasso for hierarchical interactions
• A simple method for estimating interactions between a treatment and a large number of covariates
• High-Dimensional Variable Selection for Survival Data
• Nonparametric Estimation from Incomplete Observations
• Proportional hazards tests and diagnostics based on weighted residuals
• Random Forests and Adaptive Nearest Neighbors
• Random forests
• Random survival forests
• Regression Trees for Censored Data
• Regularization and Variable Selection Via the Elastic Net
• Survival Trees by Goodness of Split
• Variable importance in binary regression trees and forests

Cited in

(3)

• Interaction forests: identifying and exploiting interpretable quantitative and qualitative interaction effects
• Two-Level Bayesian Interaction Analysis for Survival Data Incorporating Pathway Information
• Discovering interactions using covariate informed random partition models

Describes a project that uses

Uses Software

• CRAN
• randomSurvivalForest
• hierNet
• ElemStatLearn
• randomForestSRC
• bootstrap
• ggRandomForests
• GBOOST

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