Phylogenetic toric varieties on graphs

DOI10.1007/s10801-011-0308-2zbMath1376.14050arXiv1004.1183OpenAlexW2089081450MaRDI QIDQ1686124

Weronika Buczyńska

Publication date: 21 December 2017

Published in: Journal of Algebraic Combinatorics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1004.1183

Mathematics Subject Classification ID

Problems related to evolution (92D15) Toric varieties, Newton polyhedra, Okounkov bodies (14M25) Geometric invariant theory (14L24) Hilbert-Samuel and Hilbert-Kunz functions; Poincaré series (13D40) Applications of commutative algebra (e.g., to statistics, control theory, optimization, etc.) (13P25)

Related Items (6)

On the graph labellings arising from phylogenetics ⋮ Compactifications of character varieties and skein relations on conformal blocks ⋮ The algebra of \(\mathrm{SL}_3(\mathbb{C})\) conformal blocks ⋮ Conformal blocks, Berenstein-Zelevinsky triangles, and group-based models ⋮ Multigraded commutative algebra of graph decompositions ⋮ Low degree minimal generators of phylogenetic semigroups

Uses Software

• Magma

Cites Work

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• Sagbi bases of Cox-Nagata rings
• Bohr-Sommerfeld orbits in the moduli space of flat connections and the Verlinde dimension formula
• Hilbert functions of graded algebras
• The Magma algebra system. I: The user language
• Coordinate rings for the moduli stack of \(\mathrm{SL}(\mathbb C)\) quasi-parabolic principal bundles on a curve and toric fiber products
• The algebra of \(\mathrm{SL}_3(\mathbb{C})\) conformal blocks
• On geometry of binary symmetric models of phylogenetic trees
• Introduction to Toric Varieties. (AM-131)
• Geometric Invariant Theory
• Statistics
• Multigraded Hilbert schemes

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