Feature selection and tumor classification for microarray data using relaxed Lasso and generalized multi-class support vector machine

DOI10.1016/j.jtbi.2018.12.010zbMath1406.92192WikidataQ62492472 ScholiaQ62492472MaRDI QIDQ1717062

Erdal Karapınar

Publication date: 6 February 2019

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2018.12.010

zbMATH Keywords

gene expression data; tumor classification; feature genes; generalized multi-class support vector machine; relaxed Lasso

Mathematics Subject Classification ID

62J07: Ridge regression; shrinkage estimators (Lasso)

62H30: Classification and discrimination; cluster analysis (statistical aspects)

62J05: Linear regression; mixed models

68T05: Learning and adaptive systems in artificial intelligence

92C40: Biochemistry, molecular biology

Related Items

rL-GenSVM, SGL-SVM: a novel method for tumor classification via support vector machine with sparse group lasso

Uses Software

• ROCR
• glmnet
• GenSVM
• GitHub
• LORIS

Cites Work

• The Adaptive Lasso and Its Oracle Properties
• Dual coordinate descent methods for logistic regression and maximum entropy models
• A support vector machine-based ensemble algorithm for breast cancer diagnosis
• A centroid-based gene selection method for microarray data classification
• Relaxed Lasso
• Least angle regression. (With discussion)
• Sequence-based prediction of protein-protein interaction sites with L1-logreg classifier
• 10.1162/15324430152733133
• 10.1162/15324430260185628
• Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties
• Use of Ranks in One-Criterion Variance Analysis
• Gene selection for cancer classification using support vector machines
• On the learnability and design of output codes for multiclass problems
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