Automatic classification of protein structure using the maximum contact map overlap metric

DOI10.3390/A8040850zbMATH Open1461.92070OpenAlexW1698813217MaRDI QIDQ1736719FDOQ1736719

Authors: Rumen Andonov, Gunnar W. Klau, Mathilde Le Boudic-Jamin, Inken Wohlers, Hristo N. Djidjev 

Publication date: 26 March 2019

Published in: Algorithms (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.3390/a8040850

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zbMATH Keywords

scop\(k\)-nearest neighbor classificationmaximum contact map overlapprotein space metricsuperfamily classification

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20) Database theory (68P15) Algorithms on strings (68W32)

Cites Work

• Solving maximum clique problem for protein structure similarity
• Distances between sets based on set commonality
• A modification of the LAESA algorithm for approximated k-NN classification

Cited In (6)

• A new family of global protein shape descriptors
• QUBO formulation for the contact map overlap problem
• A fuzzy sets based generalization of contact maps for the overlap of protein structures
• Title not available (Why is that?)
• A new family of metrics for biopolymer contact structures
• Theory and Applications of Models of Computation

Uses Software

• TM-align
• GR-Align

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