Implementation of variable parameters in the Krylov-based finite state projection for solving the chemical master equation

DOI10.1016/J.AMC.2016.08.013zbMATH Open1411.65070OpenAlexW2513178912MaRDI QIDQ1737166FDOQ1737166

Roger B. Sidje, H. D. Vo

Publication date: 27 March 2019

Published in: Applied Mathematics and Computation (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.amc.2016.08.013

zbMATH Keywords

matrix exponentialchemical master equationfinite state projectionadaptive Krylov method

Mathematics Subject Classification ID

Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10) Numerical methods for initial value problems involving ordinary differential equations (65L05) Numerical computation of matrix exponential and similar matrix functions (65F60)

Cites Work

• Expokit
• Algorithm 919
• A multiple time interval finite state projection algorithm for the solution to the chemical master equation
• Multiscale Modeling of Chemical Kinetics via the Master Equation
• SOLVING STOCHASTIC CHEMICAL KINETICS BY METROPOLIS-HASTINGS SAMPLING
• A numerical study of large sparse matrix exponentials arising in Markov chains.

Cited In (2)

• A shift and invert reorthogonalization Arnoldi algorithm for solving the chemical master equation
• A multiple time interval finite state projection algorithm for the solution to the chemical master equation

Uses Software

• Expokit
• Algorithm 919
• phipm

This page was built for publication: Implementation of variable parameters in the Krylov-based finite state projection for solving the chemical master equation

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q1737166)