Time adaptive numerical solution of a highly degenerate diffusion-reaction biofilm model based on regularisation

DOI10.1007/s10915-017-0483-yzbMath1390.35169arXiv1703.08439OpenAlexW2615697992MaRDI QIDQ1742681

Hermann J. Eberl, Maryam Ghasemi

Publication date: 12 April 2018

Published in: Journal of Scientific Computing (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1703.08439

zbMATH Keywords

regularizationsemi-discretizationquorum sensingbiofilmtime adaptivitydegenerate diffusion-reaction equation

Mathematics Subject Classification ID

Related Items (13)

A mathematical model of quorum quenching in biofilm colonies and its potential role as an adjuvant for antibiotic treatment ⋮ Effect of inertial acoustic cavitation on antibiotic efficacy in biofilms ⋮ Simulation-based exploration of quorum sensing triggered resistance of biofilms to antibiotics ⋮ A fully explicit variational integrator for multidimensional systems of coupled nonlinear fractional hyperbolic equations ⋮ Analysis of a finite-volume scheme for a single-species biofilm model ⋮ A mathematical model of discrete attachment to a cellulolytic biofilm using random DEs ⋮ A computational study of combination HIFU-chemotherapy as a potential means of overcoming cancer drug resistance ⋮ Time adaptive numerical solution of a highly non-linear degenerate cross-diffusion system arising in multi-species biofilm modelling ⋮ Development of an integrated ultrasonic biofilm detachment model for biofilm thickness control in membrane aerated bioreactors ⋮ Numerical Solution of a Degenerate, Diffusion Reaction Based Biofilm Growth Model on Structured Non-Orthogonal Grids ⋮ Mathematical Analysis of a PDE-ODE Coupled Model of Mitochondrial Swelling with Degenerate Calcium Ion Diffusion ⋮ Discrete attachment to a cellulolytic biofilm modeled by an Itô stochastic differential equation ⋮ A study of nitric oxide dynamics in a growing biofilm using a density dependent reaction-diffusion model

Uses Software

• SPARSKIT

Cites Work

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• The dependence of quorum sensing on the depth of a growing biofilm
• A model of optimal dosing of antibiotic treatment in biofilm
• The influence of fluid flow on modeling quorum sensing in bacterial biofilms
• A degenerate diffusion-reaction model of an amensalistic biofilm control system: existence and simulation of solutions
• Time-discretization of a degenerate reaction-diffusion equation arising in biofilm modeling
• A mixed-culture biofilm model with cross-diffusion
• Modeling and simulation of a bacterial biofilm that is controlled by pH and protonated lactic acids
• Existence and longtime behavior of a biofilm model
• An efficient explicit finite-difference scheme for simulating coupled biomass growth on nutritive substrates
• Exposure of biofilms to slow flow fields: the convective contribution to growth and disinfection
• Mechanically-driven spreading of bacterial populations
• Numerical methods for a nonlinear reaction-diffusion system modelling a batch culture of biofilm
• Improved traditional Rosenbrock-Wanner methods for stiff ODEs and DAEs
• Modeling biofilm processes using the immersed boundary method
• A New Deterministic Spatio-Temporal Continuum Model for Biofilm Development
• Computational Methods for Physicists
• A positive finite-difference model in the computational simulation of complex biological film models
• AN EFFICIENT RECURSIVE ALGORITHM IN THE COMPUTATIONAL SIMULATION OF THE BOUNDED GROWTH OF BIOLOGICAL FILMS
• Mathematical Description of Microbial Biofilms
• Bi-CGSTAB: A Fast and Smoothly Converging Variant of Bi-CG for the Solution of Nonsymmetric Linear Systems
• On a fully discrete finite-difference approximation of a nonlinear diffusion–reaction model in microbial ecology

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