A Bayesian approach to identify genes and gene-level SNP aggregates in a genetic analysis of cancer data

DOI10.4310/SII.2015.V8.N2.A2MaRDI QIDQ1747441zbMATH OpenWikidataFDO

Authors Francesco C. Stingo, M. D. Swartz, Marina Vannucci

Publication date 8 May 2018

Published in Statistics and Its Interface (Search for Journal in Brave)

Full work available at URL https://doi.org/10.4310/SII.2015.V8.N2.A2

zbMATH Keywords

Bayesian variable selectionHardy-Weinberg equilibrium lawlinear modelslinkage disequilibriumMarkov random fieldSNP data

Mathematics Subject Classification ID

Bayesian problems; characterization of Bayes procedures (62C10) Asymptotic properties of parametric estimators (62F12) Applications of statistics to biology and medical sciences; meta analysis (62P10)

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Cited in

(7)

• Genome-wide haplotype association study identifies risk genes for non-small cell lung cancer
• eQTL analysis from co-localization of 2739 GWAS loci detects associated genes across 14 human cancers
• A disequilibrium model for detecting genetic mutations for cancer
• Mining susceptibility gene modules and disease risk genes from SNP data by combining network topological properties with support vector regression
• A Bayesian graphical model for genome-wide association studies (GWAS)
• A Bayesian approach for estimating dynamic functional network connectivity in fMRI data
• Simple Bayesian binary framework for discovering significant genes and classifying cancer diagnosis

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