Graphical models for genetic analyses

DOI10.1214/SS/1081443232zbMATH Open1055.62126OpenAlexW2146585970MaRDI QIDQ1764318FDOQ1764318

Authors: Steffen Lauritzen, Nuala A. Sheehan 

Publication date: 24 February 2005

Published in: Statistical Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1214/ss/1081443232

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zbMATH Keywords

Bayesian networklocal computationlinkage analysispeelingQTL analysisprobability propagationforensic genetic

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Applications of graph theory (05C90) Genetics and epigenetics (92D10)

Cites Work

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• Statistical inference from genetic data on pedigrees
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• Probabilistic expert systems for DNA mixture profiling
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Cited In (51)

• A family of CCCP algorithms which minimize the TRW free energy
• Estimation of graphical models whose conditional independence graphs are interval graphs and its application to modelling linkage disequilibrium
• Probabilistic graphical models for genetics, genomics and postgenomics
• Experiments in stochastic computation for high-dimensional graphical models
• Optimizing probability computations on dynamic processes using graphical models
• Exact recovery in the Ising blockmodel
• Title not available (Why is that?)
• Statistics for studies of human welfare
• On factorization of probability distributions over directed graphs.
• Comparison of two methods for approximation of probability distributions with prescribed marginals
• Two operations of merging and splitting components in a chain graph
• Accuracy and computational efficiency of a graphical modeling approach to linkage disequilibrium estimation
• Computing individual risks based on family history in genetic disease in the presence of competing risks
• Marginal problem, statistical estimation, and Möbius formula
• Introducing graphical models to analyze genetic programming dynamics
• Effect of Misreported Family History on Mendelian Mutation Prediction Models
• Bayesian MCMC Mapping of Quantitative Trait Loci in a Half-sib Design: a Graphical Model Perspective
• Bayesian pedigree inference with small numbers of single nucleotide polymorphisms via a factor-graph representation
• Improving some combinatorial tools
• Improved maximum likelihood reconstruction of complex multi-generational pedigrees
• Evaluating the performance of a block updating MCMC sampler in a simple genetic application
• 3d graphical visualization of the genetic architectures underlying complex traits in multiple environments
• Marginalization in multidimensional compositional models.
• Structure learning in nested effects models
• Efficient maximum likelihood pedigree reconstruction
• 7. Categorical Data Analysis
• Title not available (Why is that?)
• Title not available (Why is that?)
• Title not available (Why is that?)
• A graphical model for the evaluation of cross-transfer evidence in DNA profiles
• A sparse conditional Gaussian graphical model for analysis of genetical genomics data
• Multiple testing and error control in Gaussian graphical model selection
• Asymptotic behaviour of a BIPF algorithm with an improper target
• On Gaussian conditional independence structures
• A note on the IPF algorithm when the marginal problem is unsolvable.
• Domination of alleles: an LP approach
• Title not available (Why is that?)
• Bayesian graphical models for differential pathways
• Hierarchical Models, Marginal Polytopes, and Linear Codes
• Many-dimensional observables on Łukasiewicz tribe: constructions, conditioning and conditional independence
• Graphical models, regression graphs, and recursive linear regression in a unified way
• Title not available (Why is that?)
• A review of Gaussian Markov models for conditional independence
• Title not available (Why is that?)
• A genetic algorithm for graphical model selection
• Graphical models
• Application of a graphical model in a real paternity case
• Causal graphical models in systems genetics: a unified framework for joint inference of causal network and genetic architecture for correlated phenotypes
• Graphical chain models for the analysis of complex genetic diseases: an application to hypertension
• Graphical models for statistical inference and data assimilation
• Probability inheritance algorithm and its implementation

Uses Software

• HUGIN
• SimWalk2

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