Stochastic theory of protein synthesis and polysome: ribosome profile on a single mRNA transcript

DOI10.1016/j.jtbi.2011.08.023zbMath1397.92234arXiv1106.0674OpenAlexW2050184092WikidataQ48113776 ScholiaQ48113776MaRDI QIDQ1786501

Debashish Chowdhury, Ajeet K. Sharma

Publication date: 24 September 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1106.0674

zbMATH Keywords

master equationTASEPdistance-headwayextremum current hypothesisribosome traffic

Mathematics Subject Classification ID

Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Biochemistry, molecular biology (92C40)

Related Items (4)

A generalized Michaelis-Menten equation in protein synthesis: effects of mis-charged cognate tRNA and mis-reading of codon ⋮ On the stationary frequency of programmed ribosomal −1 frameshift ⋮ Generic nonequilibrium steady states in an exclusion process on an inhomogeneous ring ⋮ Fluctuations in interacting particle systems with memory

Cites Work

• Unnamed Item
• Modeling translation in protein synthesis with TASEP: a tutorial and recent developments
• A model of protein translation including codon bias, nonsense errors, and ribosome recycling
• Asymmetric simple exclusion model with local inhomogeneity
• Totally asymmetric exclusion processes with particles of arbitrary size
• Local inhomogeneity in asymmetric simple exclusion processes with extended objects

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