Modeling protein cores with Markov random fields

DOI10.1016/0025-5564(94)90041-8MaRDI QIDQ1804853zbMATH OpenOpenAlexWikidataFDO

Authors James V. White, Ilya B. Muchnik, Temple F. Smith

Publication date 31 August 1995

Published in Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/0025-5564(94)90041-8

zbMATH Keywords

Markov random fieldssecondary structurecontact graphsscoring functiontertiary structuresamino acid position environmentsinverse protein folding problemprotein domain coresprotein structure models

Mathematics Subject Classification ID

Random fields (60G60) Biochemistry, molecular biology (92C40) Markov processes (60J99)

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Cites work

• Markov random fields and their applications
• On measures of information and their characterizations
• Protein classification by stochastic modeling and optimal filtering of amino-acid sequences

Cited in

(4)

• Towards a general probabilistic model of protein structure: the reference ratio method
• Model-Based Assignment and Inference of Protein Backbone Nuclear Magnetic Resonances
• Probabilistic Models of Local Biomolecular Structure and Their Applications
• Model of protein fragments and statistical potentials

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