Approximating likelihoods under low but variable rates across sites

DOI10.1016/S0893-9659(99)00072-5zbMATH Open0978.62072MaRDI QIDQ1808424FDOQ1808424

Authors: P. J. Waddell, Mike Steel 

Publication date: 5 February 2002

Published in: Applied Mathematics Letters (Search for Journal in Brave)

Recommendations

• Unrooted genealogical tree probabilities in the infinitely-many-sites model
• Composite likelihood modeling of neighboring site correlations of DNA sequence substitution rates
• Continuous and tractable models for the variation of evolutionary rates
• Likelihood calculation in molecular phylogenetics

zbMATH Keywords

likelihoodDNA sequencesMarkov processesphylogenetic treespower series expansionsgenetic sequences

Mathematics Subject Classification ID

Markov processes: estimation; hidden Markov models (62M05) Applications of statistics to biology and medical sciences; meta analysis (62P10)

Cites Work

• Markov chain models - rarity and exponentiality
• Title not available (Why is that?)
• Spectral analysis and a closest tree method for genetic sequences

Cited In (2)

• Modeling the covarion hypothesis of nucleotide substitution
• Continuous and tractable models for the variation of evolutionary rates

Uses Software

• fastDNAml

This page was built for publication: Approximating likelihoods under low but variable rates across sites

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q1808424)