Approximating likelihoods under low but variable rates across sites

DOI10.1016/S0893-9659(99)00072-5MaRDI QIDQ1808424zbMATH OpenFDO

Authors P. J. Waddell, Mike Steel

Publication date 5 February 2002

Published in Applied Mathematics Letters (Search for Journal in Brave)

zbMATH Keywords

likelihoodDNA sequencesMarkov processesphylogenetic treespower series expansionsgenetic sequences

Mathematics Subject Classification ID

Markov processes: estimation; hidden Markov models (62M05) Applications of statistics to biology and medical sciences; meta analysis (62P10)

Recommendations

• Unrooted genealogical tree probabilities in the infinitely-many-sites model
• Composite likelihood modeling of neighboring site correlations of DNA sequence substitution rates
• Continuous and tractable models for the variation of evolutionary rates
• Likelihood calculation in molecular phylogenetics

Cites work

• scientific article; zbMATH DE number 3366301 (Why is no real title available?)
• Markov chain models - rarity and exponentiality
• Spectral analysis and a closest tree method for genetic sequences

Cited in

(2)

• Modeling the covarion hypothesis of nucleotide substitution
• Continuous and tractable models for the variation of evolutionary rates

Describes a project that uses

Uses Software

• fastDNAml

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