Exploring interactions in high-dimensional genomic data: an overview of logic regression, with applications

DOI10.1016/J.JMVA.2004.02.010MaRDI QIDQ1876996zbMATH OpenOpenAlexFDO

Authors Ingo Ruczinski, Charles Kooperberg, M. Leblanc

Publication date 16 August 2004

Published in Journal of Multivariate Analysis (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jmva.2004.02.010

zbMATH Keywords

Boolean logicInteractionsAdaptive model selectionBinary variablesSingle nucleotide polymorphisms

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Linear inference, regression (62J99) Applications of statistics to biology and medical sciences; meta analysis (62P10)

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• scientific article; zbMATH DE number 3385132 (Why is no real title available?)
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• Combining biomarkers to detect disease with application to prostate cancer
• Multivariate adaptive regression splines
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• The elements of statistical learning. Data mining, inference, and prediction

Cited in

(14)

• A novel approach to cancer staging: application to esophageal cancer
• Testing SNPs and sets of SNPs for importance in association studies
• Identification of SNP interactions using logic regression
• Latent variable modeling paradigms for genotype-trait association studies
• A self-organizing model for logic regression
• Standard statistical tools for the breed allocation problem
• Tree-Guided Rare Feature Selection and Logic Aggregation with Electronic Health Records Data
• Reference point logistic regression and the identification of DNA functional sites
• Sparse partitioning: nonlinear regression with binary or tertiary predictors, with application to association studies
• Iterative random forests to discover predictive and stable high-order interactions
• Detection of epistatic effects with logic regression and a classical linear regression model
• Penalized logistic regression for detecting gene interactions
• Log-linear models for gene association
• Model selection for logistic regression via association rules analysis

Describes a project that uses

Uses Software

• LogicReg
• S-PLUS
• R

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