A preconditioned conjugate gradient algorithm for GeneRank with application to microarray data mining

DOI10.1007/S10618-011-0245-7MaRDI QIDQ1944967zbMATH OpenOpenAlexFDO

Authors Gang Wu, Wei Xu, Ying Zhang, Yimin Wei

Publication date 28 March 2013

Published in Data Mining and Knowledge Discovery (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s10618-011-0245-7

zbMATH Keywords

gene networkGeneRankKrylov subspace methodmicroarraypreconditioned conjugate gradient method (PCG)

Mathematics Subject Classification ID

Learning and adaptive systems in artificial intelligence (68T05) Genetics and epigenetics (92D10)

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Cites work

• scientific article; zbMATH DE number 1049347 (Why is no real title available?)
• scientific article; zbMATH DE number 1953444 (Why is no real title available?)
• scientific article; zbMATH DE number 961607 (Why is no real title available?)
• Methods of conjugate gradients for solving linear systems
• Preconditioning techniques for large linear systems: A survey
• Refined iterative algorithms based on Arnoldi's process for large unsymmetric eigenproblems
• Templates for the Solution of Algebraic Eigenvalue Problems

Cited in

(6)

• An efficient elimination strategy for solving PageRank problems
• Effective matrix-free preconditioning for the augmented immersed interface method
• Chebyshev acceleration of the GeneRank algorithm
• An adaptive reordered method for computing PageRank
• Polynomial preconditioning for the generank problem
• Hybrid conjugate gradient methods based on an extended least-squares model

Describes a project that uses

Uses Software

• CONTEST
• GeneRank
• testmatrix
• JDQR
• JDQZ
• Matlab

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