High-dimensional structure learning of binary pairwise Markov networks: a comparative numerical study

DOI10.1016/j.csda.2019.06.012OpenAlexW2962845351MaRDI QIDQ2007999

Maiju Pesonen, Johan Pensar, Santeri Puranen, Yoshiyuki Kabashima, Jukka Corander, Ying-Ying Xu

Publication date: 22 November 2019

Published in: Computational Statistics and Data Analysis (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1901.04345

zbMATH Keywords

mutual informationIsing modelGibbs samplerpseudo-likelihoodstructure learningMarkov network

Mathematics Subject Classification ID

Computational methods for problems pertaining to statistics (62-08)

Uses Software

• LIBLINEAR
• ARACNE
• CNM
• L1General

Cites Work

• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Fast pseudolikelihood maximization for direct-coupling analysis of protein structure from many homologous amino-acid sequences
• High-dimensional Ising model selection using \(\ell _{1}\)-regularized logistic regression
• High-dimensional Ising model selection with Bayesian information criteria
• High-dimensional graphs and variable selection with the Lasso
• Emergence of Scaling in Random Networks
• Consistency of Pseudolikelihood Estimation of Fully Visible Boltzmann Machines
• Collective dynamics of ‘small-world’ networks
• Ridge Regression: Biased Estimation for Nonorthogonal Problems