A guided tour to computational haplotyping

DOI10.1007/978-3-319-58741-7_6MaRDI QIDQ2011635zbMATH OpenOpenAlexFDO

Authors Gunnar W. Klau, Tobias Marschall

Publication date 4 August 2017

Full work available at URL https://doi.org/10.1007/978-3-319-58741-7_6

zbMATH Keywords

computational haplotypinghuman genome

Mathematics Subject Classification ID

Research exposition (monographs, survey articles) pertaining to biology (92-02) Computational methods for problems pertaining to biology (92-08) Genetics and epigenetics (92D10)

Recommendations

• Computational Methods for SNPs and Haplotype Inference
• The haplotyping problem: an overview of computational models and solutions
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• scientific article; zbMATH DE number 956609
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• Theory and algorithms for the haplotype assembly problem
• Algorithmic approaches for the single individual haplotyping problem

Cites work

• Haplotype assembly from aligned weighted SNP fragments
• Solving VLSI design and DNA sequencing problems using bipartization of graphs
• The complexity of the single individual SNP haplotyping problem

Cited in

(2)

• The phasing of heterozygous traits: Algorithms and complexity
• Theory and algorithms for the haplotype assembly problem

Describes a project that uses

Uses Software

• WhatsHap
• HapCol

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