Simulation of a kink movement in homogeneous and heterogeneous DNA sequences taking into account the dissipation

DOI10.1515/RNAM-2014-0015zbMATH Open1293.35073OpenAlexW2321703975MaRDI QIDQ2016452FDOQ2016452

Authors: Andrey A. Grinevich, Artem A. Ryasik, L. V. Yakushevich 

Publication date: 20 June 2014

Published in: Russian Journal of Numerical Analysis and Mathematical Modelling (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1515/rnam-2014-0015

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zbMATH Keywords

analytic and numerical methoddissipation near the boundarysine-Gordon kink

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Soliton solutions (35C08) Biophysics (92C05)

Cited In (4)

• A combined wormlike-chain and bead model for dynamic simulations of long linear DNA
• Trajectories of DNA kinks
• Conformational B-A transition in the model of DNA molecule with asymmetric double-well interaction potential of nucleotides
• Kink velocity in nonstationary external fields for the sine-Gordon model with allowance for dissipation effects

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