Simulation of a kink movement in homogeneous and heterogeneous DNA sequences taking into account the dissipation

DOI10.1515/RNAM-2014-0015MaRDI QIDQ2016452zbMATH OpenOpenAlexFDO

Authors Andrey A. Grinevich, Artem A. Ryasik, L. V. Yakushevich

Publication date 20 June 2014

Published in Russian Journal of Numerical Analysis and Mathematical Modelling (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1515/rnam-2014-0015

zbMATH Keywords

analytic and numerical methoddissipation near the boundarysine-Gordon kink

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Soliton solutions (35C08) Biophysics (92C05)

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• A combined wormlike-chain and bead model for dynamic simulations of long linear DNA
• Trajectories of DNA kinks
• Conformational B-A transition in the model of DNA molecule with asymmetric double-well interaction potential of nucleotides
• Kink velocity in nonstationary external fields for the sine-Gordon model with allowance for dissipation effects

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