Mixed volume of small reaction networks

DOI10.2140/involve.2020.13.845zbMath1470.92410arXiv2004.14467MaRDI QIDQ2036709

Nida Obatake, Dilruba Sofia, Anne Shiu

Publication date: 30 June 2021

Published in: Involve (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/2004.14467

zbMATH Keywords

Newton polytope; conservation law; mixed volume; software package; Minkowski sum; Bernstein's theorem; chemical reaction network; positive steady state; bimolecular network; mixed-volume overcount

Mathematics Subject Classification ID

52B20: Lattice polytopes in convex geometry (including relations with commutative algebra and algebraic geometry)

14M25: Toric varieties, Newton polyhedra, Okounkov bodies

92E20: Classical flows, reactions, etc. in chemistry

14T90: Applications of tropical geometry

65H14: Numerical algebraic geometry

14Q30: Computational real algebraic geometry

Related Items

Newton-Okounkov bodies of chemical reaction systems, Absolute concentration robustness in networks with low-dimensional stoichiometric subspace

Cites Work

• Algebraic systems biology: a case study for the Wnt pathway
• The noncommutative Markovian property
• A convex geometric approach to counting the roots of a polynomial system
• Oscillations and bistability in a model of ERK regulation
• Criteria for strict monotonicity of the mixed volume of convex polytopes
• Interfacing with PHCpack
• Multistationarity in structured reaction networks
• Some Results on Injectivity and Multistationarity in Chemical Reaction Networks
• A Survey of Methods for Deciding Whether a Reaction Network is Multistationary
• Lectures on Polytopes
• Understanding bistability in complex enzyme-driven reaction networks
• Which Small Reaction Networks Are Multistationary?