Fast and effective biomedical named entity recognition using temporal convolutional network with conditional random field

DOI10.3934/MBE.2020200zbMATH Open1467.92089OpenAlexW3024030678WikidataQ100312447 ScholiaQ100312447MaRDI QIDQ2038751FDOQ2038751

Authors: Chao Che, Chengjie Zhou, Hanyu Zhao, Bo Jin, Zhan Gao 

Publication date: 7 July 2021

Published in: Mathematical Biosciences and Engineering (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.3934/mbe.2020200

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zbMATH Keywords

conditional random fieldbiomedical named entity recognitiontemporal convolutional network

Mathematics Subject Classification ID

Learning and adaptive systems in artificial intelligence (68T05) Medical applications (general) (92C50)

Cites Work

• Learning representations by back-propagating errors
• Natural language processing (almost) from scratch
• A viral protein identifying framework based on temporal convolutional network

Cited In (10)

• BTPK-based interpretable method for NER tasks based on Talmudic public announcement logic
• Entity recognition of Chinese medical text based on multi-head self-attention combined with BILSTM-CRF
• Drug-drug interaction extraction via convolutional neural networks
• Exploiting the performance of dictionary-based bio-entity name recognition in biomedical literature
• A self-attention based neural architecture for Chinese medical named entity recognition
• Pre-trained language model augmented adversarial training network for Chinese clinical event detection
• Biomedical and health information processing and analysis
• Combining sequence and itemset mining to discover named entities in biomedical texts: a new type of pattern
• Identifying clinical terms in free-text notes using ontology-guided machine learning
• A method based on multi-standard active learning to recognize entities in electronic medical record

Uses Software

• word2vec
• GloVe

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