Automated deep abstractions for stochastic chemical reaction networks
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Publication:2051806
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Cites work
- Accuracy limitations and the measurement of errors in the stochastic simulation of chemically reacting systems
- Approximation and inference methods for stochastic biochemical kinetics -- a tutorial review
- Deep abstractions of chemical reaction networks
- Deep learning
- Efficient reduction of Kappa models by static inspection of the rule-set
- Limit theorems for sequences of jump Markov processes approximating ordinary differential processes
- Lumpability abstractions of rule-based systems
- Multiscale modelling and simulation: a position paper
- Noise-induced mixing and multimodality in reaction networks
- Stochastic reduction method for biological chemical kinetics using time-scale separation
- Syntactic Markovian bisimulation for chemical reaction networks
Cited in
(12)- Deep abstractions of chemical reaction networks
- Combining multi-target regression deep neural networks and kinetic modeling to predict relative fluxes in reaction systems
- Abstraction-based segmental simulation of chemical reaction networks
- Bayesian learning of effective chemical master equations in crowded intracellular conditions
- Automated generation of conditional moment equations for stochastic reaction networks
- Abstraction of Markov population dynamics via generative adversarial nets
- A generic framework to coarse-grain stochastic reaction networks by abstract interpretation
- Semi-quantitative abstraction and analysis of chemical reaction networks
- Approximate constrained lumping of polynomial differential equations
- Using a library of chemical reactions to fit systems of ordinary differential equations to agent-based models: a machine learning approach
- Efficient and scalable prediction of stochastic reaction-diffusion processes using graph neural networks
- Conservative deep neural networks for modeling competition of ribosomes with extended length
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