Feature selection for data integration with mixed multiview data
From MaRDI portal
Publication:2078739
Abstract: Data integration methods that analyze multiple sources of data simultaneously can often provide more holistic insights than can separate inquiries of each data source. Motivated by the advantages of data integration in the era of "big data", we investigate feature selection for high-dimensional multi-view data with mixed data types (e.g. continuous, binary, count-valued). This heterogeneity of multi-view data poses numerous challenges for existing feature selection methods. However, after critically examining these issues through empirical and theoretically-guided lenses, we develop a practical solution, the Block Randomized Adaptive Iterative Lasso (B-RAIL), which combines the strengths of the randomized Lasso, adaptive weighting schemes, and stability selection. B-RAIL serves as a versatile data integration method for sparse regression and graph selection, and we demonstrate the effectiveness of B-RAIL through extensive simulations and a case study to infer the ovarian cancer gene regulatory network. In this case study, B-RAIL successfully identifies well-known biomarkers associated with ovarian cancer and hints at novel candidates for future ovarian cancer research.
Recommendations
- A statistical framework for data integration through graphical models with application to cancer genomics
- Integrative analysis and variable selection with multiple high-dimensional data sets
- A Bayesian integrative approach for multi-platform genomic data: a kidney cancer case study
- Sliced inverse regression for integrative multi-omics data analysis
- Fused Lasso approach in regression coefficients clustering -- learning parameter heterogeneity in data integration
Cites work
- An introduction to copulas. Properties and applications
- Convergence of a block coordinate descent method for nondifferentiable minimization
- Extended BIC for small-n-large-P sparse GLM
- False discoveries occur early on the Lasso path
- Graphical models via univariate exponential family distributions
- High-dimensional graphs and variable selection with the Lasso
- High-dimensional Ising model selection using \(\ell _{1}\)-regularized logistic regression
- scientific article; zbMATH DE number 5957408 (Why is no real title available?)
- scientific article; zbMATH DE number 3483405 (Why is no real title available?)
- scientific article; zbMATH DE number 845714 (Why is no real title available?)
- Information-Theoretic Limits on Sparse Signal Recovery: Dense versus Sparse Measurement Matrices
- Lasso-type recovery of sparse representations for high-dimensional data
- Linear Model Selection by Cross-Validation
- Model selection and estimation in the Gaussian graphical model
- Nearly unbiased variable selection under minimax concave penalty
- Selection and estimation for mixed graphical models
- Sharp Thresholds for High-Dimensional and Noisy Sparsity Recovery Using $\ell _{1}$-Constrained Quadratic Programming (Lasso)
- Sparsity oracle inequalities for the Lasso
- Stability
- Stability selection. With discussion and authors' reply
- Statistical significance in high-dimensional linear models
- The Adaptive Lasso and Its Oracle Properties
- The Lasso problem and uniqueness
- The Relationship between Variable Selection and Data Agumentation and a Method for Prediction
- The sparsity and bias of the LASSO selection in high-dimensional linear regression
- Theory and mathematical methods in bioinformatics
- Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties
Cited in
(6)- An optimal statistical and computational framework for generalized tensor estimation
- Multi-view heterogeneous fusion and embedding for categorical attributes on mixed data
- Integrative generalized convex clustering optimization and feature selection for mixed multi-view data
- Jackstraw inference for AJIVE data integration
- Integrated subgroup identification from multi-source data
- Integrating quantile regression for multi-source subgroup identification
This page was built for publication: Feature selection for data integration with mixed multiview data
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2078739)
