State polytopes related to two classes of combinatorial neural codes

DOI10.1016/j.aam.2022.102418zbMath1505.92009arXiv1808.06721OpenAlexW4289676518MaRDI QIDQ2081911

Yanyan Li

Publication date: 30 September 2022

Published in: Advances in Applied Mathematics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1808.06721

zbMATH Keywords

Gröbner basisstate polytopesEuler diagramscombinatorial neural codes

Mathematics Subject Classification ID

Neural networks for/in biological studies, artificial life and related topics (92B20) Polytopes and polyhedra (52B99)

Uses Software

• CoCoA
• Macaulay2
• Gfan

Cites Work

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• The neural ring: an algebraic tool for analyzing the intrinsic structure of neural codes
• Constructions and complexity of secondary polytopes
• Matroid polytopes, nested sets and Bergman fans
• Faces of generalized permutohedra
• The number of roots of a system of equations
• Neural ideals and stimulus space visualization
• Permutohedra, Associahedra, and Beyond
• A Polyhedral Method for Solving Sparse Polynomial Systems
• Ideals, Varieties, and Algorithms

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