Statistical thermodynamics of DNA with open states

DOI10.1016/J.PHYSA.2022.128156MaRDI QIDQ2096722zbMATH OpenOpenAlexWikidataFDO

Authors Aleksandr S. Nikitiuk, Yuriy V. Bayandin, Oleg B. Naimark

Publication date 11 November 2022

Published in Physica A (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.physa.2022.128156

zbMATH Keywords

DNADNA free energyDNA modelsDNA open statePeyrard-Bishop-Dauxois modelstatistical thermodynamics

Mathematics Subject Classification ID

Statistical mechanics, structure of matter (82-XX)

Cites work

• A Method for the Spatial Discretization of Parabolic Equations in One Space Variable
• A statistical model of DNA denaturation
• Breather solutions of a nonlinear DNA model including a longitudinal degree of freedom
• Critical dynamics of damage-failure transition in wide range of load intensity
• Defect-Induced Transitions as Mechanisms of Plasticity and Failure in Multifield Continua
• Dynamics of DNA breathing in the Peyrard-Bishop model with damping and external force
• scientific article; zbMATH DE number 3390276 (Why is no real title available?)
• Modulated charge patterns and noise effect in a twisted DNA model with solvent interaction
• Moving breathers in a DNA model with competing short- and long-range dispersive interactions
• Nonlinear dynamics of damped DNA systems with long-range interactions
• Semi-discrete breather in a helicoidal DNA double chain-model
• Stationary solitary and kink solutions in the helicoidal Peyrard-Bishop model of DNA molecule
• Statistical mechanical modeling of a DNA nanobiostructure at the base-pair level
• Variety of scaling laws for DNA thermal denaturation

Cited in

(2)

• RNA POLYMERASE ON DNA AS A FERMI SYSTEM: INTERNAL ENERGY, ENTROPY, HEAT CAPACITY, AND NEGATIVE TEMPERATURE
• Orientation and shear mechanisms of finite deformation of the cell cytoskeleton

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