Biophysical models of PAR cluster transport by cortical flow in \textit{C. elegans} early embryogenesis

DOI10.1007/S11538-022-00997-6MaRDI QIDQ2113600zbMATH OpenOpenAlexWikidataFDO

Authors Cole Zmurchok, William R. Holmes

Publication date 14 March 2022

Published in Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s11538-022-00997-6

zbMATH Keywords

stochastic differential equationagent-based modelembryogenesiscortical flowPAR proteinsprotein transport

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Biomechanics (92C10) Developmental biology, pattern formation (92C15)

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Cites work

• A model for intracellular actin waves explored by nonlinear local perturbation analysis
• Actomyosin regulation and symmetry breaking in a model of polarization in the early \textit{Caenorhabditis elegans} embryo
• Cortical geometry may influence placement of interface between Par protein domains in early \textit{Caenorhabditis elegans} embryos
• Mathematical model for spatial segregation of the rho-family gtpases based on inhibitory crosstalk
• Models for the length distributions of actin filaments. I: Simple polymerization and fragmenta\-tion.
• Polarization and movement of keratocytes: a multiscale modelling approach
• Statistical methodology in single-molecule experiments
• Stochastic modelling of reaction-diffusion processes
• Stochastic processes in cell biology

Cited in

(1)

• Cortical geometry may influence placement of interface between Par protein domains in early \textit{Caenorhabditis elegans} embryos

Describes a project that uses

Uses Software

• Seaborn
• Python
• IPython
• Matplotlib
• NumPy
• SciPy

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