Probabilistic models of k-mer frequencies (extended abstract)

DOI10.1007/978-3-030-80049-9_21MaRDI QIDQ2117786zbMATH OpenOpenAlexFDO

Authors Askar Gafurov, Tomáš Vinař, Broňa Brejová

Publication date 22 March 2022

Full work available at URL https://arxiv.org/abs/2112.15107

zbMATH Keywords

\(k\)-mer abundanceDNA sequencinggenome size

Mathematics Subject Classification ID

Theory of computing (68Qxx)

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Cites work

• Algorithm 778: L-BFGS-B

Cited in

(2)

• Robust k-mer frequency estimation using gapped k-mers
• Accurate k-mer classification using read profiles

Describes a project that uses

Uses Software

• LBFGS-B
• Salmon
• L-BFGS-B
• L-BFGS
• Quake
• KmerStream

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