Probabilistic models of k-mer frequencies (extended abstract)

DOI10.1007/978-3-030-80049-9_21OpenAlexW3185802787MaRDI QIDQ2117786FDOQ2117786

Askar Gafurov, Tomáš Vinař, Broňa Brejová

Publication date: 22 March 2022

Full work available at URL: https://arxiv.org/abs/2112.15107

zbMATH Keywords

DNA sequencinggenome size\(k\)-mer abundance

Mathematics Subject Classification ID

Theory of computing (68Qxx)

Cites Work

• Algorithm 778: L-BFGS-B

Cited In (1)

• Robust \(k\)-mer frequency estimation using gapped \(k\)-mers

Uses Software

• L-BFGS-B
• L-BFGS
• LBFGS-B
• Quake
• Salmon
• KmerStream

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