Computational modelling of nephron progenitor cell movement and aggregation during kidney organogenesis

DOI10.1016/J.MBS.2021.108759MaRDI QIDQ2118503zbMATH OpenOpenAlexFDO

Authors Pauli Tikka, Moritz Mercker, Ilya Skovorodkin, Ulla Saarela, Seppo Vainio, Veli-Pekka Ronkainen, James P. Sluka, James A. Glazier, Anna Marciniak-Czochra, Franz Schaefer

Publication date 22 March 2022

Published in Mathematical Biosciences (Search for Journal in Brave)

Copyright license Creative Commons Attribution 4.0 International

Full work available at URL https://doi.org/10.1016/j.mbs.2021.108759

zbMATH Keywords

particle swarm optimizationcellular Potts modelself-organizing mapsCompuCell3Dearly nephrogenesisPython analysis functions

Mathematics Subject Classification ID

Developmental biology, pattern formation (92C15) Cell movement (chemotaxis, etc.) (92C17)

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Cites work

• Self-organized formation of topologically correct feature maps

Cited in

(2)

• Dynamic modeling of branching morphogenesis of ureteric bud in early kidney development
• Modelling cellular interactions and dynamics during kidney morphogenesis

Describes a project that uses

Uses Software

• MiniSom
• GitHub
• CompuCell3D

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