\textit{Planktos}: an agent-based modeling framework for small organism movement and dispersal in a fluid environment with immersed structures

DOI10.1007/S11538-022-01027-1MaRDI QIDQ2155683zbMATH OpenOpenAlexWikidataFDO

Authors W. Christopher Strickland, Nicholas A. Battista, Christina L. Hamlet, L. A. Miller

Publication date 15 July 2022

Published in Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s11538-022-01027-1

zbMATH Keywords

agent-based modelsfluid-structure interactioncomputational fluid dynamicsmulti-scale modelingplankton

Mathematics Subject Classification ID

Animal behavior (92D50) Computational methods for problems pertaining to biology (92-08) Biopropulsion in water and in air (76Z10)

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Cites work

• scientific article; zbMATH DE number 54145 (Why is no real title available?)
• scientific article; zbMATH DE number 837911 (Why is no real title available?)
• scientific article; zbMATH DE number 2207720 (Why is no real title available?)
• A calculation of the viscous force exerted by a flowing fluid on a dense swarm of particles
• A family of embedded Runge-Kutta formulae
• A numerical study of the benefits of driving jellyfish bells at their natural frequency
• Adding ecology to particle capture models: numerical simulations of capture on a moving cylinder in crossflow
• An adaptive, formally second order accurate version of the immersed boundary method
• Approximate Integration of Stochastic Differential Equations
• Biomimetic survival hydrodynamics and flow sensing
• Distinguished material surfaces and coherent structures in three-dimensional fluid flows
• Lagrangian coherent structures and mixing in two-dimensional turbulence
• Lagrangian coherent structures and the smallest finite-time Lyapunov exponent
• Lagrangian coherent structures from approximate velocity data
• Vortex-induced vibrations: a soft coral feeding strategy?
• \textit{IB2d} reloaded: A more powerful Python and MATLAB implementation of the immersed boundary method

Cited in

(1)

• Planktos

Describes a project that uses

Uses Software

• OpenDrift
• ManifoldID
• Jupyter Notebook
• Python
• IB2d
• pandas
• SciPy
• ParaView
• VisIt
• COMSOL
• R

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