A novel association test for rare variants based on algebraic statistics

DOI10.1016/j.jtbi.2020.110228zbMath1437.92087OpenAlexW3010083981WikidataQ90066247 ScholiaQ90066247MaRDI QIDQ2180778

Wensheng Zhu, Jingbo Meng, Canhui Li, Kyongson Jon

Publication date: 14 May 2020

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2020.110228

zbMATH Keywords

Markov chain Monte Carlocontingency tablesassociation analysisMarkov bases

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10) Algebraic statistics (62R01)

Uses Software

• GWAS Catalog

Cites Work

• Markov bases in algebraic statistics.
• Markov fields and log-linear interaction models for contingency tables
• The Diaconis-Sturmfels algorithm and rules of succession
• A survey of exact inference for contingency tables. With comments and a rejoinder by the author
• Inference from iterative simulation using multiple sequences
• Algebraic algorithms for sampling from conditional distributions
• One-Way Layout for Counts and the Exact Enumeration of the Kruskal-Wallis H Distribution with Ties
• Algebraic Markov Bases and MCMC for Two‐Way Contingency Tables
• Nonparametric Covariate-Adjusted Association Tests Based on the Generalized Kendall's Tau
• Algebraic Statistics for Computational Biology

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