A framework for whole-cell mathematical modeling

DOI10.1016/j.jtbi.2004.07.014zbMath1465.92043OpenAlexW2040233316WikidataQ51986362 ScholiaQ51986362MaRDI QIDQ2186606

Ivan V. Surovtsev, Paul A. Lindahl, Jeffrey J. Morgan

Publication date: 9 June 2020

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2004.07.014

zbMATH Keywords

nonlinear dynamicssystems biologyreaction networkscell-cyclekinetics and mechanism

Mathematics Subject Classification ID

Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Biochemistry, molecular biology (92C40) Cell biology (92C37) Systems biology, networks (92C42)

Related Items (5)

Mathematical modeling of a minimal protocell with coordinated growth and division ⋮ Necessary and sufficient conditions for protocell growth ⋮ Phenotypic diversity and chaos in a minimal cell model ⋮ Whole-cell modeling framework in which biochemical dynamics impact aspects of cellular geometry ⋮ Protocell self-reproduction in a spatially extended metabolism-vesicle system

Uses Software

• GEPASI

Cites Work

• Unnamed Item
• Simulating cellular dynamics through a coupled transcription, translation, metabolic model.
• Dynamic responses of protein homeostatic regulatory mechanisms to perturbations from steady state
• Analysis of nonlinear dynamics on arbitrary geometries with the Virtual Cell

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