From dissimilarities among species to dissimilarities among communities: a double principal coordinate analysis

DOI10.1016/J.JTBI.2004.02.014MaRDI QIDQ2187667zbMATH OpenOpenAlexWikidataFDO

Authors Sandrine Pavoine, Anne-Béatrice Dufour, Daniel Chessel

Publication date 3 June 2020

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2004.02.014

zbMATH Keywords

dissimilaritydiversityquadratic entropyPCoA

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Ecology (92D40)

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• A Mathematical Theory of Communication
• A permutation test of association between configurations by means of the rv coefficient
• Cross entropy, dissimilarity measures, and characterizations of quadratic entropy
• Diversity and dissimilarity coefficients: A unified approach
• Measurement of Diversity
• Metric and Euclidean properties of dissimilarity coefficients
• Redundancy analysis: an alternative for canonical correlation analysis

Cited in

(13)

• A functional data-analytic approach to the classification of species according to their spatial dispersion. Application to a marine macrobenthic community from the Bay of Morlaix (Western English Channel)
• Kernel-penalized regression for analysis of microbiome data
• Measuring temporal trends in biodiversity
• Optimal Estimation of Wasserstein Distance on a Tree With an Application to Microbiome Studies
• A generalized framework for analyzing taxonomic, phylogenetic, and functional community structure based on presence-absence data
• Biological diversity: distinct distributions can lead to the maximization of Rao's quadratic entropy
• Towards a unifying approach to diversity measures: bridging the gap between the Shannon entropy and Rao's quadratic index
• Using PCA scores to classify species communities: An example for pelagic seabird distribution
• PCA and SVD with nonnegative loadings
• A statistical perspective on the challenges in molecular microbial biology
• A mathematical investigation of Rao diversity coefficients among the communities according to species morphometry and species taxonomy
• Adaptive gPCA: a method for structured dimensionality reduction with applications to microbiome data
• An ordination approach to explore similarities among communities

Describes a project that uses

Uses Software

• sedaR
• R

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