Multivariate analysis of noise in genetic regulatory networks

DOI10.1016/J.JTBI.2004.04.034MaRDI QIDQ2189309zbMATH OpenOpenAlexWikidataFDO

Authors Ryota Tomioka, Hidenori Kimura, Kazuyuki Aihara, Tetsuya J. Kobayashi

Publication date 15 June 2020

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2004.04.034

zbMATH Keywords

linear noise approximationLyapunov equationstochastic gene expressionnoise reductiondecoupling of a stoichiometric matrix

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Systems biology, networks (92C42)

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Cites work

• Inertia characteristics of self-adjoint matrix polynomials
• Lyapunov matrix equations in system stability and control.
• Markovian modelling of gene product synthesis
• Modeling genetic switches with positive feedback loops
• Noise-reduction through interaction in gene expression and biochemical reaction processes
• Stochastic processes in physics and chemistry.
• The role of dimerization in noise reduction of simple genetic networks

Cited in

(17)

• Investigating the two-moment characterisation of subcellular biochemical networks
• Transcriptional stochasticity in gene expression
• scientific article; zbMATH DE number 6611479 (Why is no real title available?)
• Stochastic cooperativity in nonlinear dynamics of genetic regulatory networks
• Formulas for intrinsic noise evaluation in oscillatory genetic networks
• Feedback regulation and its efficiency in biochemical networks
• Noise-reduction through interaction in gene expression and biochemical reaction processes
• Noise dissipation in gene regulatory networks via second order statistics of networks of infinite server queues
• Evaluation of the performance of mechanisms for noise attenuation in a single-gene expression
• The role of dimerization in noise reduction of simple genetic networks
• How the number of alleles influences gene expression
• Robust exponential stability analysis for stochastic genetic networks with uncertain parameters
• Stochastic noise reduction upon complexification: positively correlated birth-death type systems
• Correlated fluctuations carry signatures of gene regulatory network dynamics
• Delay-dependent stability criteria for genetic regulatory networks with time-varying delays and nonlinear disturbance
• Markovian dynamics on complex reaction networks
• Stochastic analysis of reaction-diffusion processes

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