Clustering methods for single-cell RNA-sequencing expression data: performance evaluation with varying sample sizes and cell compositions

DOI10.1515/sagmb-2019-0004zbMath1445.92228WikidataQ90917641 ScholiaQ90917641MaRDI QIDQ2195267

Aslı Suner

Publication date: 8 September 2020

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1515/sagmb-2019-0004

zbMATH Keywords

clustering; performance evaluation; single cell; RNA sequencing

Mathematics Subject Classification ID

62H30: Classification and discrimination; cluster analysis (statistical aspects)

62P10: Applications of statistics to biology and medical sciences; meta analysis

92D20: Protein sequences, DNA sequences

Uses Software

• CLUES
• ggplot2
• WGCNA
• AS 136
• t-SNE
• SC3
• CIDR
• scater