A Bayesian framework for identifying consistent patterns of microbial abundance between body sites

DOI10.1515/SAGMB-2019-0027MaRDI QIDQ2195285zbMATH OpenOpenAlexWikidataFDO

Authors Richard Meier, Jeffrey A. Thompson, Mei Chung, Naisi Zhao, Karl T. Kelsey, Dominique S. Michaud, Devin C. Koestler

Publication date 8 September 2020

Published in Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Copyright license Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International

Full work available at URL https://doi.org/10.1515/sagmb-2019-0027

zbMATH Keywords

associationBayesianconsistent patternmicrobial abundancemicrobiomezero-inflated beta regression

Mathematics Subject Classification ID

Bayesian inference (62F15) Applications of statistics to biology and medical sciences; meta analysis (62P10) Microbiology (92C70)

Recommendations

• A hierarchical Bayesian approach for detecting global microbiome associations
• A Bayesian model of microbiome data for simultaneous identification of covariate associations and prediction of phenotypic outcomes
• Bayesian graphical compositional regression for microbiome data
• A multiview model for relative and absolute microbial abundances
• Identification of microbiota dynamics using robust parameter estimation methods
• Modeling microbial abundances and dysbiosis with beta-binomial regression
• Bayesian mixed effects models for zero-inflated compositions in microbiome data analysis
• A review on probabilistic models used in microbiome studies

Cites work

• Regression analysis for microbiome compositional data
• Statistical analysis of microbiome data with R

Cited in

(4)

• A hierarchical Bayesian approach for detecting global microbiome associations
• Classification Rules that Include Neutral Zones and Their Application to Microbial Community Profiling
• IFAA: Robust Association Identification and Inference for Absolute Abundance in Microbiome Analyses
• A multiview model for relative and absolute microbial abundances

This page was built for publication: A Bayesian framework for identifying consistent patterns of microbial abundance between body sites

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2195285)