Nonlinear modelling approach to human promoter sequences

DOI10.1016/J.JTBI.2006.01.015MaRDI QIDQ2199263zbMATH OpenOpenAlexWikidataFDO

Authors Fangcui Zhao, Huijie Yang, Jian-Zhong Gu, Bing-Hong Wang

Publication date 16 September 2020

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/q-bio/0505015

zbMATH Keywords

deterministic structureshuman promoter sequencenonlinear modelling technique

Mathematics Subject Classification ID

Genetics and epigenetics (92D10)

Abstract: By means of the nonlinear modeling technique (NM technique), we find the nonlinear deterministic structures in the promoter regions (PPRs) of DNA sequences, called deterministic valleys (DVs) in this paper. These DVs prefer to occur much more outside of a special region around TSS. The number, positions and shapes of the DVs are basically different for different PPRs. Generally, these DVs do not occur in the CpG islands, which tells us that they should be special structures with new biological functions rather than the CpG islands. PACS numbers: 87.14.Gg, 87.10.1e, 05.45.2a

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Cites work

• Analysis of DNA chains by means of factorial moments
• Investigation of thermal denaturation of DNA molecules based on non-equilibrium transport approach
• Revisiting Salerno's sine-Gordon model of DNA: active regions and robustness

Cited in

(6)

• Complexities of human promoter sequences
• scientific article; zbMATH DE number 1961976 (Why is no real title available?)
• Probing the linearity and nonlinearity in DNA sequences
• Alignment-free prediction of mycobacterial DNA promoters based on pseudo-folding lattice network or star-graph topological indices
• Statistical inference for DNA sequences of promoters: a non-stationary qualitative model
• Nonlinear deterministic structures and the randomness of protein sequences.

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