Perturbation avalanches and criticality in gene regulatory networks

DOI10.1016/J.JTBI.2006.02.011zbMATH Open1447.92171OpenAlexW1981041333WikidataQ58049468 ScholiaQ58049468MaRDI QIDQ2201841FDOQ2201841

Authors: Pauli Rämö, O. Yli-Harja, Juha Kesseli 

Publication date: 17 September 2020

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2006.02.011

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zbMATH Keywords

criticalityBoolean networkbranching processgene regulatory networkperturbation avalanche

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Systems biology, networks (92C42)

Cites Work

• Statistical mechanics of complex networks
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• The Multiplicative Process
• The number and probability of canalizing functions
• The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in \textit{Drosophila melanogaster}
• Stability of functions in Boolean models of gene regulatory networks
• Genetic network models and statistical properties of gene expression data in knock-out experiments
• A proposal for using the ensemble approach to understand genetic regulatory networks
• On spectral techniques in analysis of Boolean networks

Cited In (10)

• On the sparse percolation of damage in finite non-synchronous random Boolean networks
• The Diffusion of Perturbations in a Model of Coupled Random Boolean Networks
• Perturbation in Genetic Regulatory Networks: Simulation and Experiments
• Percolation on the gene regulatory network
• Dynamical criticality in gene regulatory networks
• Robustness and evolvability in genetic regulatory networks
• Measures for information propagation in Boolean networks
• Avalanches in a short-memory excitable network
• Why a simple model of genetic regulatory networks describes the distribution of avalanches in gene expression data
• On the dynamics of random Boolean networks subject to noise: attractors, ergodic sets and cell types

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