Genetic code from tRNA point of view

DOI10.1016/J.JTBI.2006.05.008MaRDI QIDQ2201978zbMATH OpenOpenAlexWikidataFDO

Authors Vladimir R. Chechetkin

Publication date 17 September 2020

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2006.05.008

zbMATH Keywords

genetic codetRNAmutational and translational stabilityaminoacyl-tRNA synthetasecodon-anticodon pairingevolution of code

Mathematics Subject Classification ID

Genetics and epigenetics (92D10)

Recommendations

• \textit{tRNA genes} and the genetic code
• Block structure and stability of the genetic code
• The impact of including tRNA content on the optimality of the genetic code
• Evolution of the genetic code through progressive symmetry breaking
• Local stability and evolution of the genetic code

Cites work

• scientific article; zbMATH DE number 3839870 (Why is no real title available?)
• scientific article; zbMATH DE number 52831 (Why is no real title available?)
• scientific article; zbMATH DE number 3617328 (Why is no real title available?)
• scientific article; zbMATH DE number 897462 (Why is no real title available?)
• An Eulerian path approach to DNA fragment assembly
• Block structure and stability of the genetic code
• The impact of including tRNA content on the optimality of the genetic code

Cited in

(16)

• Suggested phylogeny of tRNAs based on the construction of ancestral sequences
• On the 28-gon symmetry inherent in the genetic code intertwined with aminoacyl-tRNA synthetases -- the Lucas series
• Stability of the genetic code and optimal parameters of amino acids
• Match fitness landscapes for macromolecular interaction networks: selection for translational accuracy and rate can displace tRNA-binding interfaces of non-cognate aminoacyl-tRNA synthetases
• Shannon information entropy in the canonical genetic code
• Computer simulation of tRNA evolution
• Local stability and evolution of the genetic code
• Error compensation of tRNA misacylation by codon-anticodon mismatch prevents translational amino acid misinsertion
• Structuring of the genetic code took place at acidic pH
• Symmetries by base substitutions in the genetic code predict \(2^\prime\) or \(3^\prime\) aminoacylation of tRNAs
• Optimizing the codon usage of synthetic gene with QPSO algorithm
• \textit{tRNA genes} and the genetic code
• A geometric model for codon recognition logic
• Putative anticodons in mitochondrial trna sidearm loops: pocketknife tRNAs?
• Classification of the possible pairs between the first anticodon and the third codon positions based on a simple model assuming two geometries with which the pairing effectively potentiates the decoding complex
• tRNA structure from a graph and quantum theoretical perspective

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